The three pleaded not guilty Wednesday to burglary and weapon charges.
The Queens district attorney's office says a witness saw the blue minivan outside his home Monday with a woman in the driver's seat and the two men going out his front door.
His sister's apartment in the home had been broken into. A handheld game and $1,500 were stolen.
A police officer saw the same minivan later and arrested the three after seeing the men break into another apartment, prosecutors say.
A 5-month-old and a 4-year-old were in the minivan with the woman at the time.
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