But the origins of the government public relations stunt that went awry remained a mystery - and a potential political problem for Obama. The White House military office approved the photo op, which cost $35,000 in fuel alone for the plane and two jet fighter escorts.
"I think this is one of those rare cases where we can all agree it was a mistake," Pentagon spokesman Geoff Morrell said of Monday's "unfortunate" flight low over the Hudson River that for many on the ground evoked chilling memories of 9/11.
The sight of the huge passenger jet and an F-16 fighter plane whizzing past the Statue of Liberty and the lower Manhattan financial district sent panicked office workers streaming into the streets.
WCBS-TV in New York reported Tuesday that it had obtained a Federal Aviation Administration memo outlining the photo op. The memo acknowledged "the possibility of public concern regarding (Defense Department) aircraft flying at low altitudes" around Manhattan, but the TV station reported that the FAA demanded secrecy from the New York Police Department, the mayor's office, the Secret Service and the FBI.
A White House official has said the New York City mayor's office and other New York and New Jersey police agencies were told about the Boeing 747's flight. The official said the FAA, at the military's request, told local agencies that the information was classified and asked them not to publicize it.
White House officials did not say why new photos were needed of the plane that is sometimes used as Air Force One - Obama wasn't aboard the flight - or who the presumed audience of the planned photographs were.
Air Force officials began to provide basic information Tuesday about the cost of the flights, but did not disclose how long the public has paid for similar photo op flights.
And public officials from the White House to New York still had not explained why they acceded to a plan that informed several dozen officials about the impending flight but kept the public in the dark.
"I think we've all learned something from it and now it's time to make sure our procedures are better and to get on with other things," New York Mayor Michael Bloomberg said. "It does seem like it was a waste of money, but that's up to the federal government."
White House officials said Obama was fuming mad and thinks Air Force One didn't need a new publicity photo anyway.
Defense Secretary Robert Gates "did not know in advance about this flying photo op," Morrell said. "Once he found out, suffice it to say he was surprised and not very pleased."
The presidential air fleet answers to the White House military office, whose director, Louis Caldera, issued a mea culpa on Monday.
"While federal authorities took the proper steps to notify state and local authorities in New York and New Jersey, it's clear that the mission created confusion and disruption," Caldera's statement said. "I apologize and take responsibility for any distress that flight caused."
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