The company said the reopening will come in phases, and will be fully operational by Friday.
EMR's license was temporarily suspended after a two-alarm fire on May 29.
Chopper 6 was over a large scrapyard fire in Camden, New Jersey
In a statement, EMR said it will be instituting a new operating framework to reduce lithium-ion battery fire risk and strengthen incident response.
EMR also said it will have continuous monitoring through a permanent 24/7 Fire Watch, and an "advanced fire suppression system."
The city said there have been 12 fires at EMR over the past five years.