The glitch is especially frustrating because they came on the first day MVC offices were open on Mondays in a year.
The agency reversed a decision last summer to close on Mondays to save money. The decision resulted in longer lines and waiting times.
MVC spokesman Mike Horan says the computer problems started shortly before 9 a.m.
The MVC reported that the issues were solved by 1:00 p.m.
The agencies will be open between 8 a.m. and 5.30 p.m. weekdays and until 7:30 p.m. on Tuesdays. The offices operate on Saturdays from 8 a.m. until 1 p.m.